| ZKO number |
ZKO615 |
| Recent progress of this line |
F2 individuals have been indentified
|
|
Gene name |
pnpla4
|
|
Ensembl ID |
ENSDARG00000069834
|
|
Zebrafish strain |
AB
|
|
Cas9 target site 1 sequence |
sense strand
GGTAAATGTCTCGTTTGCTGcgg
|
|
Cas9 target site 2 sequence |
|
|
Position in the gene |
Exon 2
|
|
Restriction enzyme (RE) |
BsmAI
|
|
PCR primer (forward) |
5’- AATGGGCTACGCTACTTACGA -3’
|
|
PCR primer (reverse) |
5’- AACCACGTCTCACCTCTTCTACT-3’
|
|
Length of expected PCR product (bp)
|
633
|
|
Length of expected RE digestion product (bp) |
363 bp +270 bp
|
|
Plasmids used for making Cas9 mRNA |
pXT7-hCAS9
|
| Plasmids?used?for?making?gRNA |
pMD19T-gRNA
|
| Primers?used?for?making?gRNA |
Pr-ZKO 615
|
|
Dosage of injected Cas9 mRNA (ng/ul)
|
300
|
|
Dosage of injected gRNA (ng/ul)
|
50
|
|
Survival rate of F0 embryo @ 1dpf (%)
|
91
|
|
Method to estimate mutation efficiency |
sequencing of PCR product
|
|
Stage of the embryos collected for mutation detection |
http://www.zfish.cn/upload/file/ZKOPDF/ZKO615.pdf
|
|
Mutation efficiency in F0 embryos (%)
|
15
|
Picture?from?F0?embryos
? (gel?picture?or?sequencing?picture) |
|
|
Mutation type
|
Indel
|
|
Germline transmission efficiency in adult F0
|
4
|
|
Wild-type (WT) sequence
|
GGTAAATGTCTCGTTTGCTGCGG
|
Germline mutations in selected F0
(By screening F1 embryos) |
F0-1 |
GACGxxxxxxxxGTGTACTGCGG (+1bp, -9 bp)
|
|
F0-2
|
GGTAAATGTCTxxxxxxxxGCGG (+0 bp, -8 bp)
|
Mosaicism in selected F0
(By screening F1 adults) |
F0-1
|
ctctgtctgtcggtgtacagGTGTGATGGTGGTAAATGT--------CTGCGGCTGGGTTTTTAGGAG (+0 bp, -8 bp)
|
|
F0-2
|
ctctgtctgtcggtgtacagGTGTGATGGTGGTAAATGTC-------CTGCGGCTGGGTTTTTAGGAG (+0 bp, -7 bp)
|
|
Allele name and predicted product
|
615a
615b |
ctctgtctgtcggtgtacagGTGTGATGGTGGTAAATGT--------CTGCGGCTGGGTTTTTAGGAG truncated (53 aa)
|
| ctctgtctgtcggtgtacagGTGTGATGGTGGTAAATGTC-------CTGCGGCTGGGTTTTTAGGAG truncaed (11 aa) |
|
突变创建时间 |
2013-05-11
|
|
填表时间 |
2013/12/23
|
|
修改时间 |
2016/10/24
|
|
PI/负责人 (工作单位) |
|
